PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00024
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 328aa    MW: 36484.5 Da    PI: 8.8676
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00024genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.3e-14556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+ +v+++G+g Wk I +         +R+  ++k++w+++
       AA39G00024  5 KLKWTAEEEEALLAGVAKHGPGKWKNILKDAEfadqlSNRSNIDLKDKWRNL 56
                     689***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.794162IPR017930Myb domain
SuperFamilySSF466895.38E-16360IPR009057Homeodomain-like
SMARTSM007171.0E-9459IPR001005SANT/Myb domain
PfamPF002496.2E-11556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-14556IPR009057Homeodomain-like
CDDcd116603.98E-21757No hitNo description
SMARTSM005262.0E-12124190IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.5E-9125188IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150418.461126216IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467854.3E-10127189IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005386.5E-7128188IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGNQKLKWTA EEEEALLAGV AKHGPGKWKN ILKDAEFADQ LSNRSNIDLK DKWRNLNVAP  60
DIQGSKDKIR TPKIKAAAVH LAAIAAAATN TPTPTANSTP ITSFARSASP DLSIDDNSNI  120
VVDAKNAPRY DGMIFEALSA LANTNGSEVG DIFNFIQQQR HEVAPNFRRI LSSRLRRLAA  180
RGKLVKKKFT NLVSYLLMFW SSLQYTQLQN SYKIMNDNAM GTRAIMPSPR TEVVSAQPQQ  240
ANTSQAPVVS EDMIIEGASE RLAQLIVEAE NKSYEFREAM EEYERMVKIA DEADTILEIV  300
KEMQEACSLG KTVIFKSTIF KFPSHSYV
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00024
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008305.11e-114telomere repeat-binding factor 4 isoform X1
SwissprotF4I7L11e-99TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLV4KYH51e-111V4KYH5_EUTSA; Uncharacterized protein
STRINGXP_006416694.11e-112(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.14e-86MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]