PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00204
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 188aa    MW: 21102.8 Da    PI: 4.2532
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00204genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-191060155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                s+y+GVr +k +grWv+eIr p++   r r++lg+++t+e+Aaka +aa  +l+g
  AA39G00204 10 SKYTGVRKRK-WGRWVSEIRLPNS---RERIWLGSYDTPEKAAKAFDAAQFCLRG 60
                89*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-121060IPR001471AP2/ERF domain
CDDcd000181.23E-281070No hitNo description
SuperFamilySSF541712.22E-201070IPR016177DNA-binding domain
PROSITE profilePS5103221.6141168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-291169IPR001471AP2/ERF domain
SMARTSM003808.4E-291174IPR001471AP2/ERF domain
PRINTSPR003671.2E-81223IPR001471AP2/ERF domain
PRINTSPR003671.2E-83450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEGSSSSMQS KYTGVRKRKW GRWVSEIRLP NSRERIWLGS YDTPEKAAKA FDAAQFCLRG  60
SDAKFNFPDN PPVISGGRDL SRSEIQEAAA RFANSEENTL KEDESIEIPQ ESPSTSATSM  120
DIDSEFLGML PTADSGNFAS DFGLFPEFNN FSHEYSGDHF GEEPSSHNAE YNYGEDNYDN  180
GSFLLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-149761280Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00204
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_173355.39e-93Integrase-type DNA-binding superfamily protein
SwissprotQ84QC28e-94ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A178W5111e-91A0A178W511_ARATH; Uncharacterized protein
STRINGAT1G19210.13e-92(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-96ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]