PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA39G00305

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

WOX

Protein Properties

Length: 193aa MW: 21969.6 Da PI: 5.8812

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA39G00305	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.2	8.1e-20	80	140	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t++ql++Le+ + + + +p++++++e++++l +te++V++WFqNrRa+ k+ AA39G00305 80 RHRWTPTTTQLQILESIYSEgSGTPNRRRIREITSELsehgTITETNVYNWFQNRRARSKR 140 89***************99************************************97 PP
2	Wus_type_Homeobox	101.5	6.1e-33	79	142	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt++Q++iLe++y++G tPn+++i++it+eL+e+G i+++NV++WFQNr+aR+++kq AA39G00305 79 TRHRWTPTTTQLQILESIYSEGSGTPNRRRIREITSELSEHGTITETNVYNWFQNRRARSKRKQ 142 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.46E-17	75	142	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-15	75	144	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.107	76	141	IPR001356	Homeobox domain
SMART	SM00389	2.9E-12	78	145	IPR001356	Homeobox domain
CDD	cd00086	9.85E-13	80	142	No hit	No description
Pfam	PF00046	2.4E-17	80	140	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0010072	Biological Process	primary shoot apical meristem specification
GO:0051301	Biological Process	cell division
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MEMNRESQNA AFHDGRVMTE EQMEILRKQI AVYAVICDQL VVLHNSLSSL HPLSSELRLS 60 NGGYLDPILG SSSVHRISTR HRWTPTTTQL QILESIYSEG SGTPNRRRIR EITSELSEHG 120 TITETNVYNW FQNRRARSKR KQTSVVTDQI DAAATANMEE EMRSCGDSGG LEDYEHILFP 180 PPDLGILFYL FNI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	141	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA39G00305

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_173493.2	1e-98	WUSCHEL related homeobox 14
Swissprot	Q9LM84	1e-99	WOX14_ARATH; WUSCHEL-related homeobox 14
TrEMBL	A0A178W4J5	2e-97	A0A178W4J5_ARATH; WOX14
STRING	AT1G20700.1	6e-98	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12211	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20700.1	1e-87	WUSCHEL related homeobox 14

Publications ? help Back to Top
Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997]