PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00346
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Dof
Protein Properties Length: 255aa    MW: 29191 Da    PI: 4.4651
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00346genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof116.79.3e-373390461
      zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                +a +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG++rn+P+Ggg+rk+ +s
  AA39G00346 33 AAPPCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSIRNIPIGGGCRKRSRS 90
                5678**************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-252489IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.233589IPR003851Zinc finger, Dof-type
PfamPF027011.4E-313589IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103773IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MLPYIGHNSY HQFPLPEMDD TPAKWKQLYG HEAAPPCPRC ASSNTKFCYY NNYSLSQPRY  60
FCKGCRRYWT KGGSIRNIPI GGGCRKRSRS RQNSHRRFGR NENQPDGIIN QDVGVQSSSG  120
SDAPDIDLAA VFAQYVTDQS SSSRDNTTRS DQDSPATTIN VLDSLNWDIC QEIDENLEFY  180
SEFNLTQKIQ DRDLDQLFQE EREEMFEFQS LLDDKEIQEI LASSFPEEPE ELASPASFMI  240
NGDNWSSTDL TRFGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18590KRSRSR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00346
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306088.21e-135dof zinc finger protein DOF1.2
SwissprotP683491e-136DOF12_ARATH; Dof zinc finger protein DOF1.2
TrEMBLR0GT631e-134R0GT63_9BRAS; Uncharacterized protein
STRINGCagra.1632s0025.1.p1e-135(Capsella grandiflora)
STRINGXP_006306088.11e-135(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64622643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21340.11e-105Dof family protein