PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00364
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 376aa    MW: 42717.3 Da    PI: 9.4466
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00364genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-06252273627
                 -SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                 C+ f +tG C+ G++Ck +H++
  AA39G00364 252 CPVFEATGSCPKGSKCKLHHPK 273
                 *****************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.554162191IPR000571Zinc finger, CCCH-type
SMARTSM003560.021163190IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-4197222IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.225197223IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-4224250IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313224251IPR000571Zinc finger, CCCH-type
SMARTSM003562.1251273IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.094252274IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043484Biological Processregulation of RNA splicing
GO:0060149Biological Processnegative regulation of posttranscriptional gene silencing
GO:0016607Cellular Componentnuclear speck
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MRKPPWLWLH LQRKQVKSIV DKVIPGQTET ILHAYSPVLS TFESMSLGYI YSYPILMVMA  60
LASAFSGLVL YATKWTLLGE LYREYLLKRE FLADVGSPCS GPSENGKGAK KPFIPKRLVI  120
GNEEYVRVGN GNQLVRDPKK RTRVLANEKV RWSLHNVRLR LAKKKKYCQF FTRFGKCNKD  180
DGKCPYIHDP SKIAVIPERM PDCSYFLQGL CNNGACPYRH VHVNPNAAIC DEFLKGYCSD  240
GDECRKKHTY TCPVFEATGS CPKGSKCKLH HPKKQTKGKK RKRASEPSQK NARGRYFGSL  300
HKDLSESEPM VLDRRAIDNE VFGIQGLEFI KLDSTEYQAS SETDDQTATE QLISSDGEVS  360
IEDLIRPVLL MQQEVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277283GKKRKRA
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00364
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0303843e-96BT030384.1 Arabidopsis thaliana At1g21570 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416288.11e-156uncharacterized protein At1g21580 isoform X1
RefseqXP_024007844.11e-156uncharacterized protein At1g21580 isoform X2
SwissprotQ3ED781e-162C3H7_ARATH; Zinc finger CCCH domain-containing protein 7
TrEMBLD7KK271e-172D7KK27_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_10018291e-173(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57801012
Publications ? help Back to Top
  1. Hématy K, et al.
    The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis.
    PLoS Genet., 2016. 12(2): p. e1005817
    [PMID:26828932]