PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00394
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 198aa    MW: 22166.9 Da    PI: 6.5343
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00394genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.34e-183989155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++ykGVr ++ +g+Wv+eIr p   +k++r++lg++ tae Aa+a++ a ++l+g
  AA39G00394 39 KKYKGVRMRS-WGSWVSEIRAP---NKKTRIWLGSYSTAEAAARAYDVALLCLKG 89
                59*****998.**********9...347************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-114089IPR001471AP2/ERF domain
PROSITE profilePS5103222.1814097IPR001471AP2/ERF domain
SMARTSM003807.4E-3740103IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-204098IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-304098IPR001471AP2/ERF domain
PRINTSPR003674.3E-94152IPR001471AP2/ERF domain
CDDcd000182.31E-284399No hitNo description
PRINTSPR003674.3E-96379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MVKQEIKNQT ITSSSSSSSS SSSSSSSSKR LIKKKNKIKK YKGVRMRSWG SWVSEIRAPN  60
KKTRIWLGSY STAEAAARAY DVALLCLKGP QANLNFPNLV NSNTSFDEMT LLSPKSIQRV  120
AAQAANSSSF DPFTPQQHHG DDDNGMLPMM DSSSWYDDDL DKMLFLDDII TPFDYSMTTT  180
IVDDLFYEDA DIPLWSFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-1637103269ATERF1
3gcc_A7e-1637103269ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00394
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1467573e-48BT146757.1 Medicago truncatula clone JCVI-FLMt-5M3 unknown mRNA.
GenBankCR5387233e-48CR538723.1 M.truncatula DNA sequence from clone MTH2-27D24 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110164.17e-64PREDICTED: ethylene-responsive transcription factor ERF012-like
SwissprotQ9SFE49e-63ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLA0A078JS932e-62A0A078JS93_BRANA; BnaAnng29870D protein
TrEMBLA0A397YNU92e-62A0A397YNU9_BRACM; Uncharacterized protein
TrEMBLM4DIS32e-62M4DIS3_BRARP; Uncharacterized protein
STRINGBra016400.1-P3e-63(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.12e-57ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]