PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA39G00537

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

YABBY

Protein Properties

Length: 249aa MW: 28155.6 Da PI: 5.8746

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA39G00537	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	241	2.5e-74	12	188	2	169
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkee..lleelkv.eeenlksnvekeesas 93 ++f+ ++q+C+vqC+fC+til+vsvP+tsl+++vtvrCGhC+sllsvnl+kas +lla+ s+ld+++ +e ++ +++v eee +k+n++ ++s++ AA39G00537 12 HLFDLPGQICHVQCGFCTTILLVSVPFTSLSMMVTVRCGHCSSLLSVNLMKASfiplHLLASLSNLDHEVGQEetVATTDGVeEEEGWKVNNVDKDSPT 110 78999********************************************9999999******9877666666666615677******** PP YABBY 94 tsvsseklsenedeevp.rvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 t vss++ +e+ed++v+ rv++ v++PPekrqr+Psayn+fikeei+r+ka+nP+++h+eafs+aaknWahfP++h++ AA39G00537 111 TLVSSNSDNEDEDKDVShRVYQvVNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPVHHK 188 99988888888762688889**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.7E-60	17	187	IPR006780	YABBY protein
SuperFamily	SSF47095	6.68E-9	129	184	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	7.3E-6	135	184	IPR009071	High mobility group box domain
CDD	cd00084	0.00209	143	179	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MTRIPNMTTL NHLFDLPGQI CHVQCGFCTT ILLVSVPFTS LSMMVTVRCG HCSSLLSVNL 60 MKASFIPLHL LASLSNLDHE VGQEETVATT DGVEEEEGWK VNNVDKDSPT TLVSSNSDNE 120 DEDKDVSHRV YQVVNKPPEK RQRAPSAYNC FIKEEIRRLK AQNPSMAHKE AFSLAAKNWA 180 HFPPVHHKRA ASDQCFCQED DNNVALIPHQ EEHEESNTNG FRERKAQRHS IWGKSPFEVW 240 VFEESVGNE

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA39G00537

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013696181.1	1e-136	axial regulator YABBY 4
Swissprot	Q9LDT3	1e-130	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A087HQN1	1e-137	A0A087HQN1_ARAAL; Uncharacterized protein
STRING	A0A087HQN1	1e-138	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8044	27	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	1e-125	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]