PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00621
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family G2-like
Protein Properties Length: 250aa    MW: 28688.3 Da    PI: 6.8051
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00621genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.91.5e-301771155
     G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                k rl+W++eLH+rF++av+qLGG++kAtPk+++++m+++gLtl+++kSHLQkYR 
  AA39G00621 17 KSRLKWSHELHNRFIDAVNQLGGPHKATPKSLMRVMEIPGLTLYQLKSHLQKYRK 71
                68****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.4991474IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-271671IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-221773IPR006447Myb domain, plants
SuperFamilySSF466897.17E-161773IPR009057Homeodomain-like
PfamPF002491.1E-71970IPR001005SANT/Myb domain
PfamPF143794.1E-15107154IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDDKRIKKLL MSSKEFKSRL KWSHELHNRF IDAVNQLGGP HKATPKSLMR VMEIPGLTLY  60
QLKSHLQKYR KRQGFGDNKQ AAETLEAGNQ GEITVTEEKD DETKEIVQTK EELQTEVEVQ  120
KQLHQEIKVQ RNLQVRIEAE GKYLDSVLMK AQETLSGYTS WTLRSCASSS FSGLTQDEDD  180
GTKRFLESKK PENRGIRETR SSVDSSLTSL ESSEIEMVTE EVKKRSWNDA VCVQEPPNQH  240
LELSLNSFKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-181770154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-181770154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-181770154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-181770154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00621
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868747.14e-76myb family transcription factor PHL8-like isoform X2
SwissprotF4I2743e-73PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLV4KSL82e-73V4KSL8_EUTSA; Uncharacterized protein
STRINGXP_006415961.13e-74(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.22e-64G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]