PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00657
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MIKC_MADS
Protein Properties Length: 213aa    MW: 25106.3 Da    PI: 8.6357
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00657genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.55.5e-31959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+nrqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eyss
  AA39G00657  9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDADVALIVFSNKGKLFEYSS 59
                79***********************************************96 PP
2K-box71.33e-2468161397
       K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                 +++  + ++ ++ +++ e+++Lk++ie L+++qRh+ GedL+s+slkeLq+Le+qL+++lk+iR++K +  +e+i ++q+ + e+q++  + +++
  AA39G00657  68 ERQLIAPTSDQNTNWSIEYNRLKAKIELLEKNQRHYEGEDLDSMSLKELQNLEHQLDTALKHIRTRKIKE-REKILKTQQNQWEQQNNVVQVHQQ 161
                 5666666777899******************************************************886.455555555555555555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.5E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.604161IPR002100Transcription factor, MADS-box
CDDcd002658.93E-39262No hitNo description
SuperFamilySSF554556.67E-31278IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-313859IPR002100Transcription factor, MADS-box
PfamPF014862.0E-1976154IPR002487Transcription factor, K-box
PROSITE profilePS5129713.16879168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FSKRRAGLLK KAHEISVLCD ADVALIVFSN KGKLFEYSSD  60
SNWYSYAERQ LIAPTSDQNT NWSIEYNRLK AKIELLEKNQ RHYEGEDLDS MSLKELQNLE  120
HQLDTALKHI RTRKIKEREK ILKTQQNQWE QQNNVVQVHQ QYQHLYMNPN HTSHFLNMGG  180
LNQEEEDPRT MRSNNLDLTL EPIYNFNLGC FAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-19159159MEF2C
5f28_B3e-19159159MEF2C
5f28_C3e-19159159MEF2C
5f28_D3e-19159159MEF2C
6byy_A3e-19159159MEF2 CHIMERA
6byy_B3e-19159159MEF2 CHIMERA
6byy_C3e-19159159MEF2 CHIMERA
6byy_D3e-19159159MEF2 CHIMERA
6bz1_A3e-19159159MEF2 CHIMERA
6bz1_B3e-19159159MEF2 CHIMERA
6bz1_C3e-19159159MEF2 CHIMERA
6bz1_D3e-19159159MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00657
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105460.11e-105PREDICTED: floral homeotic protein APETALA 1
RefseqXP_013652316.11e-105floral homeotic protein APETALA 1
SwissprotP0DI141e-106AP1_BRARP; Floral homeotic protein APETALA 1
TrEMBLA0A0C5PW811e-104A0A0C5PW81_LEPSV; Apetala 1
STRINGBostr.10273s0459.1.p1e-106(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-99MIKC_MADS family protein