PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00687
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 297aa    MW: 33402.7 Da    PI: 4.7197
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00687genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.22.7e-1592133247
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47 
                 +  GVr +k +g+W+AeIr+p     + +r +lg++gt+eeAaka+ 
  AA39G00687  92 KPVGVRLRK-SGKWAAEIRHPI----TkARTWLGTYGTPEEAAKAYA 133
                 789*****9.7*********72....36*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.41E-1891132No hitNo description
SMARTSM003807.1E-1392146IPR001471AP2/ERF domain
PfamPF008472.4E-992132IPR001471AP2/ERF domain
PROSITE profilePS5103215.72592151IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-1394138IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-1695135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MADYSQQLLS EADTMKSKRA AFSCETKPMR KVRIIVSDPY ATEDSSSDEE LELPRQSKVK  60
RIVHEITIPE SFQDSFYGVK TSKKIPSKQS KKPVGVRLRK SGKWAAEIRH PITKARTWLG  120
TYGTPEEAAK AYADKKLVFD ALVSSSSENN SSVMSETNQP ASAPPDLTKE LFFDFDFADL  180
QIPDLGFLEG EESMACGANG VEVDFDCFLM DESDHLLNDF SLLNDVNISG FENGPSELPD  240
CDFTDVEFEL NDSNFLRVLY LDFEVKNGRR ELKRVARALA LVLCCKHVTV SFSLRQY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00687
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415875.17e-79ethylene-responsive transcription factor ERF116
RefseqXP_024008729.17e-79ethylene-responsive transcription factor ERF116
RefseqXP_024008730.17e-79ethylene-responsive transcription factor ERF116
SwissprotQ9CA271e-61EF118_ARATH; Ethylene-responsive transcription factor ERF118
TrEMBLV4L3A52e-77V4L3A5_EUTSA; Uncharacterized protein
STRINGXP_006415875.13e-78(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151191619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25470.26e-56ERF family protein
Publications ? help Back to Top
  1. Tran MK,Schultz CJ,Baumann U
    Conserved upstream open reading frames in higher plants.
    BMC Genomics, 2008. 9: p. 361
    [PMID:18667093]