PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00699
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 220aa    MW: 25108 Da    PI: 5.7888
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00699genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.4e-09111157454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h+ +Er RR++iN+++  L++l+P +     k +  a +L   ++Y++sL
  AA39G00699 111 SHSLAERVRREKINERLRSLQDLVPGC----YKTMGMAVMLDVIIDYVRSL 157
                 8************************98....24466777777777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-16105175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.91E-12105162No hitNo description
Gene3DG3DSA:4.10.280.104.9E-16107169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.758107157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-6111157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-8113163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000488Biological Processpositive regulation of brassinosteroid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MAEYEQDHAY NIDINPWLSH INQTSELQNL VSTPSNFMLF SNGALVDHTH QNLNNFSLLH  60
GNLGGNGNIE ETSGSRRRRK RSEAMNDDDD HLQKPRDVVH IRAKRGQATD SHSLAERVRR  120
EKINERLRSL QDLVPGCYKT MGMAVMLDVI IDYVRSLHNQ IEFLSMKLSA ASAFYDFNSV  180
DIEPTNIYQG SNIYDAETME MMLRNCDGTQ PPNFTSTLPF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00699
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627373.11e-105PREDICTED: transcription factor bHLH75
SwissprotA4D9982e-96BH075_ARATH; Transcription factor bHLH75
TrEMBLA0A3P6BNS61e-104A0A3P6BNS6_BRAOL; Uncharacterized protein
STRINGBo3g138670.11e-104(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140812024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.12e-92bHLH family protein
Publications ? help Back to Top
  1. Khan M, et al.
    Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling.
    Nat Commun, 2014. 5: p. 4687
    [PMID:25134617]
  2. Eremina M, et al.
    Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991
    [PMID:27655893]
  3. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]