PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA3G00107
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 356aa    MW: 41154.8 Da    PI: 7.5121
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA3G00107genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1721.8e-53101391129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                +ppGfrFhPtdeel+++yLkkk++ +k+e+ evi+evd++k+ePwdL++++k     ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + 
  AA3G00107  10 VPPGFRFHPTDEELLHYYLKKKISYHKFEM-EVIREVDLNKLEPWDLQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRN-SY 107
                69****************************.99**************964444222455*************************************9.89 PP

        NAM  98 elvglkktLvfykgrapkgektdWvmheyrle 129
                +++g++ktLvfykgrap+g+ktdW+mheyrle
  AA3G00107 108 KKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 139
                99****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-579176IPR003441NAC domain
PROSITE profilePS5100556.5610176IPR003441NAC domain
PfamPF023659.6E-2811138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGSSSVNGGV PPGFRFHPTD EELLHYYLKK KISYHKFEME VIREVDLNKL EPWDLQERCK  60
IGSTPQNEWY FFSHKDRKYP TGSRTNRATH AGFWKATGRD KCIRNSYKKI GMRKTLVFYK  120
GRAPHGQKTD WIMHEYRLED ADDLQANLTV RSPYFCSYKF FKTNEDGWVV CRVFMKKNLF  180
KVGNEANSSM NSSDQYVHDG SNDNNTLQAR SFMHRDSPYQ LVRNHGATTF ELNKPDLALQ  240
YPPLFHKPPS LGFDYSSGLT RDCESAASEG LQYQQNCETG LEVGTCETAA ATHHHHHHHH  300
HDQQQQQQQG LGEWAMLDRL VTCHMGNEDS SSVQVEPATN QQLSLRGEMD FWGYSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-501017815170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA3G00107
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0270352e-35AC027035.5 Arabidopsis thaliana chromosome 1 BAC T16O9 genomic sequence, complete sequence.
GenBankCP0026842e-35CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290194.10.0protein BEARSKIN2
SwissprotQ9SV870.0BRN2_ARATH; Protein BEARSKIN2
TrEMBLR0FKW80.0R0FKW8_9BRAS; Uncharacterized protein
STRINGBostr.25463s0283.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52132648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.10.0NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]