PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA3G00116
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family DBB
Protein Properties Length: 156aa    MW: 17285.1 Da    PI: 4.6394
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA3G00116genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.34.8e-06446541
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                C+ +e+ e +  C +++  lC++C  + H+       H++v 
  AA3G00116  4 QCEVCEKAEGEVLCCSDEAVLCKSCDNTVHEAnklfrrHQRVA 46
               7******99*********************7678888898875 PP
2zf-B_box32.61.7e-105794338
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                + C+ ++e +  +fC +++ llCedC  ++H    H+
  AA3G00116 57 TPLCDICQERKGYFFCLEDRALLCEDCDNAIHATtsHE 94
               689******99*********************667786 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.239147IPR000315B-box-type zinc finger
CDDcd000219.33E-4347No hitNo description
SMARTSM003365.5E-7447IPR000315B-box-type zinc finger
PROSITE profilePS501199.9975598IPR000315B-box-type zinc finger
SMARTSM003367.3E-125598IPR000315B-box-type zinc finger
PfamPF006431.3E-85795IPR000315B-box-type zinc finger
CDDcd000218.44E-85898No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MKIQCEVCEK AEGEVLCCSD EAVLCKSCDN TVHEANKLFR RHQRVALQKD ADRFSRTPLC  60
DICQERKGYF FCLEDRALLC EDCDNAIHAT TSHERFLLSG VQVADQSSTE NSGCSTSVSS  120
ETYQIQSKGS LNNQYSSEET EAGNSGETTR PPPLSS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in seedling photomorphogenesis. {ECO:0000250|UniProtKB:Q9SJU5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA3G00116
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545743e-44AC254574.1 Capsella rubella clone JGIBSIA-41H23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_192762.15e-81B-box zinc finger family protein
SwissprotO826174e-82BBX23_ARATH; B-box zinc finger protein 23
TrEMBLA0A178UTH91e-79A0A178UTH9_ARATH; Bbx23
STRINGBostr.25463s0295.1.p7e-83(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125022430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10240.12e-84DBB family protein
Publications ? help Back to Top
  1. Zhang X, et al.
    A PIF1/PIF3-HY5-BBX23 Transcription Factor Cascade Affects Photomorphogenesis.
    Plant Physiol., 2017. 174(4): p. 2487-2500
    [PMID:28687557]