PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA3G00152
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 166aa    MW: 19074.2 Da    PI: 6.659
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA3G00152genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-183585155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               + y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  AA3G00152 35 PSYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDVAALAIKG 85
               57*****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-123585IPR001471AP2/ERF domain
CDDcd000183.65E-333595No hitNo description
PROSITE profilePS5103223.093693IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-223694IPR016177DNA-binding domain
SMARTSM003804.4E-383699IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-323694IPR001471AP2/ERF domain
PRINTSPR003674.7E-113748IPR001471AP2/ERF domain
PRINTSPR003674.7E-115975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MKPIDRKRER DDNDYDHDHD HHHHHHHDVV SKHHPSYRGV RMRQWGKWVS EIREPRKKSR  60
IWLGTFSTAE MAARAHDVAA LAIKGVSAHL NFPHLAFHFP RPATAHPKDI QAAAAAAATA  120
AVETQTLISP DDDDDAFSDL PDLLLDVNHE IYGFWDSFPY GETFFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-193094873Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA3G00152
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634757.17e-64PREDICTED: ethylene-responsive transcription factor ERF038-like
SwissprotQ9ZQP32e-63ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A0D3C4D72e-62A0A0D3C4D7_BRAOL; Uncharacterized protein
TrEMBLA0A3N6S1H82e-62A0A3N6S1H8_BRACR; Uncharacterized protein
STRINGBo4g184540.13e-63(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.12e-53ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]