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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
AA3G00201 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 341aa MW: 38567.7 Da PI: 9.8933 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| AA3G00201 | genome | VEGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 381.4 | 1.4e-116 | 1 | 341 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyye....pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla.. 92
mdd ++ r+k+ ++ +s+k q+ms+iaerda+i+ernla++ekkaa+aerdmaflqrd+a+aern+a++erdn+l+al+++e +a
AA3G00201 1 MDDGHRENgRHKAAQGqwlmQHqPSMK-----QVMSIIAERDAAIQERNLAITEKKAAIAERDMAFLQRDTAIAERNNAIMERDNALTALQYRESPMAsa 95
666655557887733312233334555.....*************************************************************9988888 PP
GAGA_bind 93 ....salpvgvqvlsgtksidslqq..lse..........pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskk 176
s++p+g+q+++g+k++++ q+ +++ pq++++a+e+r+++ ++ lp ++ ea e++k+k+++r k+pk ++++ +k+ ++k+++
AA3G00201 96 tsnmSTCPPGCQISRGVKHMHHPQHqqQHHhihhhhqhqiPQMNENAYETRDMDPNNGLP--PSPIEALEAPKPKRGKRVKEPKLTTQTGNKR-GTKNQR 192
999999**************99776323337999********************999888..6778999*****************9999888.778899 PP
GAGA_bind 177 kvkkesader.......................skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrg 252
kvkke+++ + sk+++k++++ +ln+v++De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S++PLP+ +++r+
AA3G00201 193 KVKKENEELSkimfvkthdytsndesskhlligSKSDWKNQEMvGLNQVAYDETTMPPPVCSCTGILRQCYKWGNGGWQSSCCTTTLSMHPLPALPNKRH 292
99999988445********************************88******************************************************* PP
GAGA_bind 253 aRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
aR++grKmS++af+klL++LaaeG+dlsnpvDLkd WAkHGtn+++ti+
AA3G00201 293 ARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDNWAKHGTNRYITIK 341
************************************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 341 aa
Download sequence Send
to blast |
MDDGHRENGR HKAAQGQWLM QHQPSMKQVM SIIAERDAAI QERNLAITEK KAAIAERDMA 60
FLQRDTAIAE RNNAIMERDN ALTALQYRES PMASATSNMS TCPPGCQISR GVKHMHHPQH 120
QQQHHHIHHH HQHQIPQMNE NAYETRDMDP NNGLPPSPIE ALEAPKPKRG KRVKEPKLTT 180
QTGNKRGTKN QRKVKKENEE LSKIMFVKTH DYTSNDESSK HLLIGSKSDW KNQEMVGLNQ 240
VAYDETTMPP PVCSCTGILR QCYKWGNGGW QSSCCTTTLS MHPLPALPNK RHARVGGRKM 300
SGSAFNKLLS RLAAEGHDLS NPVDLKDNWA KHGTNRYITI K
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
