PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA3G00213

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Protein Properties

Length: 181aa MW: 20700.6 Da PI: 7.7088

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA3G00213	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.7	1.4e-15	96	179	1	90
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v+ +l lp +f+++h k ++ +tl de+g++ e + r+++ l++GW +F+ +++L +gD +vF+l++ ++f AA3G00213 96 FIKSMLQSHVSGGFWLGLPVHFCRSHLPK--SDGVITLIDEDGEEHETIHLARRTG----LSGGWMGFAVSHNLADGDALVFQLIRPTTF 179 89**********************423..3448***********555555....*********************9986655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.65E-21	90	181	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.2E-17	91	181	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.20E-23	94	181	No hit	No description
Pfam	PF02362	1.1E-12	96	179	IPR003340	B3 DNA binding domain
SMART	SM01019	3.6E-19	96	181	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.307	96	181	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MVVAKRSSSY EEFRLRRVEE NKKRMEALNL LKLSRDLHST SMKSSQVLIL FFYFRNEMCK 60 VRDFSNRVYA SEESRDDALS RAEKLQADLG DEFPSFIKSM LQSHVSGGFW LGLPVHFCRS 120 HLPKSDGVIT LIDEDGEEHE TIHLARRTGL SGGWMGFAVS HNLADGDALV FQLIRPTTFK 180 V

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA3G00213

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010481962.1	8e-87	PREDICTED: B3 domain-containing protein At5g42700-like isoform X2
Swissprot	Q9FMZ4	1e-79	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A398AD74	5e-83	A0A398AD74_BRACM; Uncharacterized protein
STRING	XP_010495620.1	4e-84	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	5e-82	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]