PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA3G00221
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ZF-HD
Protein Properties Length: 241aa    MW: 27566 Da    PI: 7.7521
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA3G00221genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer69.17.4e-2256108257
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                  +k++Y +C+kN+A  lG+ a+DGCgEf++++ ee   ++++C ACgCHR+FH  ++
    AA3G00221  56 KKLHYGQCRKNQADGLGTIAYDGCGEFVSAPAEE---DSMNCVACGCHRSFHEEKS 108
                  5789*************************97666...***************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.2E-1758107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.2E-1959106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152319.26560107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-1460109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.4E-22171240IPR009057Homeodomain-like
SuperFamilySSF466893.37E-14175240IPR009057Homeodomain-like
PROSITE profilePS500718.892180241IPR001356Homeobox domain
TIGRFAMsTIGR015651.4E-26182238IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDEKLKCVDD ATAFICREIG DHVHYPPARV ARSSRLHHAP SSIHYTGLES TSRITKKLHY  60
GQCRKNQADG LGTIAYDGCG EFVSAPAEED SMNCVACGCH RSFHEEKSLN KTIRSTNNEN  120
DFTEAVIKVL KRSSDQLRQI LTCPYTSKFE ENEPSPSGVD LISKDEHRGG DVVEKEEKGL  180
KVKRFKTKFS AEQTEKMRNY AEKLQWKINP ENKDEVEQFC SEIGVKLQKF RVWLQNHRDK  240
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-141822391774ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA3G00221
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865484.12e-77zinc-finger homeodomain protein 13
SwissprotQ9FMY71e-67ZHD13_ARATH; Zinc-finger homeodomain protein 13
TrEMBLA0A1J3E1G33e-77A0A1J3E1G3_NOCCA; Zinc-finger homeodomain protein 13
STRINGscaffold_800848.17e-77(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM158881113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42780.15e-66homeobox protein 27