PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA3G00257
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 185aa    MW: 21543.4 Da    PI: 6.3657
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA3G00257genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.3e-111381781055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r+RR++iN+++ +L+ l+P+      +K++ +++Le Av+Y+k Lq
  AA3G00257 138 RKRREKINERLKTLQNLVPNG-----TKVDISTMLEDAVHYVKFLQ 178
                9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.964128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-13130182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-12133181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-12134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.33E-10137182No hitNo description
PfamPF000101.9E-8138178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEIETMVDCE LESLLGMFSF DNFSSHEQQK QEDHLLFSSF YNEINGFSSD HTNFEFPFSS  60
MLMNNTNYQS LLESSDHQKQ EQEMMMKPKK KQRLSLEMSL NSSDDEKLSI DETLRSVKGK  120
GRRASKGTAT DPQSLYARKR REKINERLKT LQNLVPNGTK VDISTMLEDA VHYVKFLQLQ  180
IKVRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA3G00257
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013659642.15e-55transcription factor bHLH54-like
SwissprotQ3E7L71e-55BH139_ARATH; Transcription factor bHLH139
TrEMBLA0A078GM471e-53A0A078GM47_BRANA; BnaA09g27770D protein
STRINGBra032846.1-P4e-54(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41322257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43175.12e-50bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]