PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA3G00262
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NF-YC
Protein Properties Length: 134aa    MW: 15007.3 Da    PI: 10.3501
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA3G00262genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC51.32.6e-1613921997
      NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                e+P+ r+kki+k d+dv++i aea  l++ + elf+  l+ +s + + e+kr+t+    + +av+r + + dfl+d  p
  AA3G00262 13 PEFPVGRVKKIMKLDKDVNKINAEALHLVTYSTELFLRLLAEKSAVVTGEKKRKTVSFDHLRTAVKRHQpTSDFLLDSLP 92
               589**************************************************************9976489*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.02E-18693IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.3E-20978IPR009072Histone-fold
PfamPF008086.1E-191477IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MAEEESPAAN YRPEFPVGRV KKIMKLDKDV NKINAEALHL VTYSTELFLR LLAEKSAVVT  60
GEKKRKTVSF DHLRTAVKRH QPTSDFLLDS LPLPAQTIDR VVRPAKSVTE KAVPAGTRRI  120
DDFFSKGKTQ AESS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA3G00262
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_199139.11e-62nuclear factor Y, subunit C13
TrEMBLA0A087GPC64e-62A0A087GPC6_ARAAL; Uncharacterized protein
TrEMBLA0A178UGE25e-62A0A178UGE2_ARATH; NF-YC13
STRINGA0A087GPC66e-63(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128602530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.14e-66nuclear factor Y, subunit C13