PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA3G00272
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 123aa    MW: 13830.3 Da    PI: 7.5188
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA3G00272genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY322.4e-10103122221
                --SS-EEEEEEE--TT-SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefp 21 
                dDgy+WrKYGqK++k++++p
  AA3G00272 103 DDGYKWRKYGQKSIKNTPNP 122
                8*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-994122IPR003657WRKY domain
PROSITE profilePS5081112.50797123IPR003657WRKY domain
SuperFamilySSF1182905.62E-897122IPR003657WRKY domain
PfamPF031061.3E-6103122IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MGEEEEASEW IRGFQNKEVN ELLRVTKPPL LFIPQEQDTK VATANEYLTS STLHSPAPVL  60
EPRDAPVRPI SISNFSPLEK SSSSSKVDKY TLKVTNSSNG MIDDGYKWRK YGQKSIKNTP  120
NPX
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA3G00272
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442042.12e-30PREDICTED: probable WRKY transcription factor 49
SwissprotQ9FHR74e-29WRK49_ARATH; Probable WRKY transcription factor 49
TrEMBLA0A087GMD62e-28A0A087GMD6_ARAAL; Uncharacterized protein
STRINGXP_010442042.17e-30(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94052637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.17e-29WRKY DNA-binding protein 49