PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA3G00274

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

NAC

Protein Properties

Length: 242aa MW: 27884.7 Da PI: 8.1973

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA3G00274	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.1	1.7e-49	16	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhPtd+el+v+yL++kv+g +l+ +i+e+di+k++Pw+Lp ++e yfFs+r+ ky++g+r+nrat sgyWkatg dk+++ ++++ AA3G00274 16 LPPGFRFHPTDQELLVQYLHRKVTGLPLPP-FIIPETDICKADPWELPGD---CDSERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKQIIGLkGEKV 111 79***********************999.57***********44...47899*****************************997647788 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kktLvfykg+ p+g++tdWv+heyrl AA3G00274 112 IGMKKTLVFYKGKPPNGTRTDWVLHEYRL 140 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-59	13	166	IPR003441	NAC domain
PROSITE profile	PS51005	56.704	16	166	IPR003441	NAC domain
Pfam	PF02365	5.1E-26	17	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MENQSSIIIK NRALRLPPGF RFHPTDQELL VQYLHRKVTG LPLPPFIIPE TDICKADPWE 60 LPGDCDSERY FFSTREAKYP NGNRSNRATG SGYWKATGID KQIIGLKGEK VIGMKKTLVF 120 YKGKPPNGTR TDWVLHEYRL ADSQQLEITF TDSINMNWVL CRVFLKKRSC NNKKKEEDDE 180 KNCPIFYDFL TKNERENGGF RDLNLIPISC SSSSSSVVTQ TSSNDEHDQE ISCRENKFCL 240 FL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-50	14	171	15	170	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-50	14	171	15	170	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-50	14	171	15	170	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-50	14	171	15	170	NO APICAL MERISTEM PROTEIN
3swm_A	3e-50	14	171	18	173	NAC domain-containing protein 19
3swm_B	3e-50	14	171	18	173	NAC domain-containing protein 19
3swm_C	3e-50	14	171	18	173	NAC domain-containing protein 19
3swm_D	3e-50	14	171	18	173	NAC domain-containing protein 19
3swp_A	3e-50	14	171	18	173	NAC domain-containing protein 19
3swp_B	3e-50	14	171	18	173	NAC domain-containing protein 19
3swp_C	3e-50	14	171	18	173	NAC domain-containing protein 19
3swp_D	3e-50	14	171	18	173	NAC domain-containing protein 19
4dul_A	3e-50	14	171	15	170	NAC domain-containing protein 19
4dul_B	3e-50	14	171	15	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269\|PubMed:24243147}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA3G00274

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010469465.1	1e-109	PREDICTED: NAC domain-containing protein 41-like
Swissprot	O22798	1e-101	NAC41_ARATH; NAC domain-containing protein 41
TrEMBL	R0HQU6	1e-104	R0HQU6_9BRAS; Uncharacterized protein
STRING	XP_010469465.1	1e-109	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1806	27	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.2	7e-98	NAC domain containing protein 41

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]