PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA3G00280

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Trihelix

Protein Properties

Length: 326aa MW: 36532.9 Da PI: 7.5114

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA3G00280	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	90.4	1.9e-28	46	139	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rWt+qe+l+Li+++r e+r+rrg+ + +p+W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e++ ++ ++s +++ +++ AA3G00280 46 RWTRQEILVLIQGKRVAENRVRRGRvsgmaigsgQLEPKWASVSSYCRRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQMKDVTESYWSMRNDV 139 8********************97778888888*******************************************999999999998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.5E-13	46	136	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.5E-5	46	111	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.4	46	112	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0050777	Biological Process	negative regulation of immune response
GO:0071219	Biological Process	cellular response to molecule of bacterial origin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MALEQLGLGV SAVDGKVNAV TQTSVENSVR SNDGGDDGVK TPRLPRWTRQ EILVLIQGKR 60 VAENRVRRGR VSGMAIGSGQ LEPKWASVSS YCRRHGVNRG PVQCRKRWSN LAGDYKKIKE 120 WESQMKDVTE SYWSMRNDVR RERKLPGFFD KEVYDIVDGG VTLPDIPAGP VLALGLGPTP 180 AEPNNETDQV RIAPEMESLL SDLDRKEPER NPSPSPASAH QSIQGTENEK QKESTNQETG 240 FASQEERKRK RTVTNEANPE REEETKSMQH QLIEILERNG QLLAAQLEVQ NSNLKLDREQ 300 RKDQSDNMVA VLNKLADAVS RIADKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00288	DAP	Transfer from AT2G33550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA3G00280

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024003747.1	1e-155	trihelix transcription factor ASR3
Swissprot	Q8VZ20	1e-148	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A1J3E8P9	1e-157	A0A1J3E8P9_NOCCA; Uncharacterized protein
TrEMBL	A0A1J3I6I5	1e-157	A0A1J3I6I5_NOCCA; Uncharacterized protein
STRING	XP_006410499.1	1e-156	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6557	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-150	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]