PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA40G00128
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 228aa    MW: 25575.8 Da    PI: 8.3139
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA40G00128genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.5e-061335123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ykC++C+k+F+++  L  H++ H
  AA40G00128 13 YKCNYCHKPFPTSQALGGHQNAH 35
                9*******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.19E-7941No hitNo description
Gene3DG3DSA:3.30.160.603.1E-41139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.2E-61337IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.7391340IPR007087Zinc finger, C2H2
PROSITE patternPS0002801537IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MMETYPPSSK KLYKCNYCHK PFPTSQALGG HQNAHKHERE WEKKQKEMES EYPGLSFLAP  60
YIDKPHLLLG GYSQHSLSNE NHLGISLDSF KRIGNNNDNN NNNNNKMYPS GGFFARGYKD  120
LNMTLPPRVT PTRFFGKGNT FGASSSKDSI FNSRRCFFKP RNLLSLPCPP QAMDLSMGLV  180
SKEINESSSD GSMNLISKIG RSNVVEIEDD DSEESQAKIL GIDLSLSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA40G00128
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289398.12e-65uncharacterized protein LOC17881961
TrEMBLR0FJL26e-64R0FJL2_9BRAS; Uncharacterized protein
STRINGXP_006289398.19e-65(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.14e-63C2H2 family protein