PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA40G00153
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 128aa    MW: 14249.1 Da    PI: 9.2516
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA40G00153genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.6e-086384627
                -SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
                C++f  t +C+ Gd+C++ H++
  AA40G00153 63 CNRFITTNFCPLGDSCRYLHPK 84
                ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004514.5E-4338IPR003604Zinc finger, U1-type
SuperFamilySSF576675.88E-13445No hitNo description
PfamPF062206.4E-9537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010312.1745785IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-66184IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-56383IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-46384IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MPGGKYYCDY CDKEFQDTQV ARKRHLQSKP HLRAKALWYS SASSSSSDLN HPQVSNFAPR  60
GFCNRFITTN FCPLGDSCRY LHPKNITGAT GGLVSERGGA RGGWFNLPPS LKPPPEFGYP  120
QLPPLDWG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA40G00153
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874322.11e-62zinc finger CCCH domain-containing protein 3
SwissprotQ0JP112e-29C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLD7M5C73e-61D7M5C7_ARALL; Uncharacterized protein
STRINGscaffold_602796.16e-62(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104742225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.14e-62C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]