PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA40G00159
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family M-type_MADS
Protein Properties Length: 714aa    MW: 79866.3 Da    PI: 5.0035
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA40G00159genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.77.1e-191252242
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                +ie++s r++tf kRr+g+lKKA+ELS+LC+++ + i++++
  AA40G00159 12 FIEDNSARKITFKKRRKGLLKKAYELSTLCNVQTCAIVYGP 52
                8**************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-21362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.096351IPR002100Transcription factor, MADS-box
CDDcd002666.19E-15587No hitNo description
SuperFamilySSF554551.44E-21597IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-10525IPR002100Transcription factor, MADS-box
PfamPF003191.8E-181253IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-102540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MSKLRKRVKL AFIEDNSARK ITFKKRRKGL LKKAYELSTL CNVQTCAIVY GPYDDEPQIW  60
PEEEPLKELI SKFKVLPEAS QTKRQVNMQE LMFRRFKKVE ERVKKLAAEK KDLEMRELIS  120
DYMNGKNMSQ RCYTLEEMID FGSYLDTRLE DCIRVLGINP NDAASGSGSG SGSGSSTAAA  180
PFRFNLRIRQ DENVSSNPVS GPLVPAVSGA VPIQFPVTSM ALGSSPMGAM VSQAGHIGLY  240
GPVHQYENMN LNQNQPQNVQ FPVITMTPAT TLSEVVPMWF NAPNQLYMNP NSYQNHLAQI  300
HHYQNQNQPQ YLQFPVATTT PATATTTTTM SPAIHPMWFY NQNQQYMNPN VYLNQNQQPQ  360
AQFTVAPTSP ALSMAMNSFP GAVPMAFYNQ PNQYQNLNQL PQYSNMNLNP SFPGEYSVTP  420
TTSPPNMMAN TFPETPMRFS DQNQQFQNLN LNQNQLAQPN HYLGSNLNSN LNQNQLGQVQ  480
YPMTNATQFL APMTNGFPGR SPIRSCDNLQ ELQSIIQNQP REVQYPVTTA ASTLSPMATH  540
GAVETTPLSF GDQIPQSMNR NENGKQMEAV QVPVATMAPD LASSPIAAVA SEASSVRFRN  600
QINQNQNPSE NTHEFPITPQ APHYVPSPID FYGQFQQRNE DENSNQDLDP NHEEWVREML  660
QGPPNMETNE ELMRFPLMED NQENEVNNDL PAADASDKTG PDSSIASTSA DSSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1426RKRVKLAFIEDNSARKITFKKRR
22327KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA40G00159
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.14e-26AGAMOUS-like 36