PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA40G00266
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 386aa    MW: 42611.8 Da    PI: 6.894
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA40G00266genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.1e-184090256
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                 y+GVr++  +g+WvAeIr+p   + r +r +lg+f t  +Aa a+++a+ kl+g+
  AA40G00266 40 TYRGVRQRT-WGKWVAEIREP---N-RgTRLWLGTFNTSLQAALAYDQAAIKLYGH 90
                69****999.**********8...3.35*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.26E-253997No hitNo description
PROSITE profilePS5103221.7464097IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-304098IPR001471AP2/ERF domain
SMARTSM003802.4E-3440103IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-204098IPR016177DNA-binding domain
PfamPF008472.4E-134090IPR001471AP2/ERF domain
PRINTSPR003673.5E-94152IPR001471AP2/ERF domain
PRINTSPR003673.5E-96379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
METQQQEQNN QVTPKKRGNM GRSRKGCMKG KGGPENATCT YRGVRQRTWG KWVAEIREPN  60
RGTRLWLGTF NTSLQAALAY DQAAIKLYGH QAKLNLPLQQ QQQFLHNSST LSFSSSSSSS  120
LSRVSSRDYQ SRCQSQSPCF SSSSNLCWLL PKQHQILQED QESVGFNETA TFRGKEKARF  180
GFNETATFRG KGGVGFNETK TFRGKEDGCN ETVTFRGKGG GVGFNETTTF RGKEDGFNET  240
VTFRGKEEEG VGFNETVTFS SKGEEGVNET VAFRGKGEGV NETVAFRGKE GGSWSRFLVG  300
EERKVEGGDV SMSSSSCGST ENKESLGVAI AVGNGGSGEG SSTGYLEMDD LLEIDDLGML  360
IEKNGDFKNW CSDDFQHPWN NNYNWY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-184199362ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA40G00266
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022563474.12e-54dehydration-responsive element-binding protein 2G-like
SwissprotP618273e-53DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLA0A087G8825e-57A0A087G882_ARAAL; Uncharacterized protein
STRINGA0A087G8828e-58(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99782035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-47ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]