PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA40G00281

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

NAC

Protein Properties

Length: 340aa MW: 38994 Da PI: 5.7841

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA40G00281	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.5	7.2e-55	29	156	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdee+v++yLk+kv ++++++ ++ e+d++k+ePwdLpk++k +eke yfF++rd+ky+tg r+nrat+sgyWkatgkdke++++k+ l AA40G00281 29 LPPGFRFHPTDEEIVTFYLKEKVLNTQFTA-VAMGEADLNKSEPWDLPKRAKMGEKEFYFFCERDRKYPTGMRTNRATASGYWKATGKDKEIFKNKTCL 126 79***********************999.67***********99999**************************************9999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 +g+kktLvfy+grap+gekt+Wvmheyrle AA40G00281 127 IGMKKTLVFYRGRAPRGEKTNWVMHEYRLE 156 ****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-61	25	181	IPR003441	NAC domain
PROSITE profile	PS51005	58.09	29	180	IPR003441	NAC domain
Pfam	PF02365	1.9E-29	30	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MAVEEGMVCN KIQIRGNNNN SEEEEVVELP PGFRFHPTDE EIVTFYLKEK VLNTQFTAVA 60 MGEADLNKSE PWDLPKRAKM GEKEFYFFCE RDRKYPTGMR TNRATASGYW KATGKDKEIF 120 KNKTCLIGMK KTLVFYRGRA PRGEKTNWVM HEYRLEGKYS YHNLPKSARD EWVVCRVFHK 180 NSPSTSINTT SSTSNQVMTK IPLEDFTRMD SLENIDHLLD FSALPPLIDP TFPGQPDQFN 240 TYQSMFNPGF DPIYRGENSN NNKNKNMIKM EQSFVSVSQE TCLSSDVITN ANANANAAAN 300 VNAEVCSYPM MKQEMKMGMG IENDGKSYED LYSLGNLWEY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-50	27	182	15	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-50	27	182	15	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-50	27	182	15	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-50	27	182	15	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-50	27	182	18	170	NAC domain-containing protein 19
3swm_B	2e-50	27	182	18	170	NAC domain-containing protein 19
3swm_C	2e-50	27	182	18	170	NAC domain-containing protein 19
3swm_D	2e-50	27	182	18	170	NAC domain-containing protein 19
3swp_A	2e-50	27	182	18	170	NAC domain-containing protein 19
3swp_B	2e-50	27	182	18	170	NAC domain-containing protein 19
3swp_C	2e-50	27	182	18	170	NAC domain-containing protein 19
3swp_D	2e-50	27	182	18	170	NAC domain-containing protein 19
3ulx_A	2e-50	16	182	2	170	Stress-induced transcription factor NAC1
4dul_A	2e-50	27	182	15	167	NAC domain-containing protein 19
4dul_B	2e-50	27	182	15	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00518	DAP	Transfer from AT5G18270	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA40G00281

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010454055.1	1e-165	PREDICTED: NAC domain-containing protein 92
Swissprot	Q9FK44	1e-165	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A1J3IPJ2	1e-165	A0A1J3IPJ2_NOCCA; Uncharacterized protein
STRING	XP_010454055.1	1e-165	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2269	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	1e-154	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]