PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA40G00302
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 256aa    MW: 29993.8 Da    PI: 10.4485
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA40G00302genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.58.9e-172721787
                E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3 17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87
                ++p +f++++ +++ +  ++++l++++g+sW +++  +k+++  y+ ++GW +Fv++ngL+e++ v+F+++++
  AA40G00302  2 MIPGEFIRRIsQENGRLLFKMVLKTRWGKSWPIQI--SKTQKFyYMEKSGWDQFVNDNGLRENELVTFTHEEN 72
                79********866667999****************..999999566669********************8664 PP
2B348.12.1e-151742531498
                 T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3  14 grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   l +pk+f+++h+ k  e+k+ ++ +++g +sW+v + +  ++++  +++GW + +k+  L  gD+++Fkl++   +e+++ v r
  AA40G00302 174 FFLGIPKRFLDKHMPK--ETKEFMIHHKNGkKSWKVVYLV--TDKQSRISAGWARLAKEYPLVIGDVCIFKLIK--PTEMLLEVSR 253
                 4577*********855..55689999988889******55..5555559**********************987..5556777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.929183IPR003340B3 DNA binding domain
SMARTSM010199.1E-7183IPR003340B3 DNA binding domain
PfamPF023624.5E-15272IPR003340B3 DNA binding domain
CDDcd100174.95E-10271No hitNo description
SuperFamilySSF1019363.92E-14283IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-15383IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-19156253IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-19158253IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.758161255IPR003340B3 DNA binding domain
CDDcd100171.72E-13162248No hitNo description
SMARTSM010195.7E-17164255IPR003340B3 DNA binding domain
PfamPF023623.9E-12171251IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
RMIPGEFIRR ISQENGRLLF KMVLKTRWGK SWPIQISKTQ KFYYMEKSGW DQFVNDNGLR  60
ENELVTFTHE ENMFCNVEIY QINCEELLKP RKSSAIASSS SSSKNKTEQV KNMNINVKIE  120
DSDSRTVQSI RKTKNPNQEI NNKSEESKKK KKIDESSSSL IPEFTVTIKK SYLFFLGIPK  180
RFLDKHMPKE TKEFMIHHKN GKKSWKVVYL VTDKQSRISA GWARLAKEYP LVIGDVCIFK  240
LIKPTEMLLE VSRRAK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA40G00302
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010420536.12e-89PREDICTED: B3 domain-containing protein At5g18000-like
SwissprotQ9FJG21e-80Y5800_ARATH; B3 domain-containing protein At5g18000
TrEMBLA0A087G8234e-84A0A087G823_ARAAL; Uncharacterized protein
STRINGXP_010420536.19e-89(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.14e-75VERDANDI
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]