PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA40G00457
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 420aa    MW: 46451.9 Da    PI: 6.9849
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA40G00457genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH331e-104671126
                --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                ++++ C+++ rtG C++G++C+F+H+
  AA40G00457 46 PGEPDCSYYIRTGLCRFGSTCRFNHP 71
                5789*********************8 PP
2zf-CCCH35.12.2e-1194118327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C ++ +tGtCk+G +CkF H++
  AA40G00457  94 QPECEYYIKTGTCKFGVTCKFDHPR 118
                 799********************96 PP
3zf-CCCH38.42.1e-12140164327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +  C++f+rtG+Ck+G++CkF+H++
  AA40G00457 140 EDDCSYFLRTGQCKFGGTCKFNHPQ 164
                 578********************97 PP
4zf-CCCH35.71.4e-11276301227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++ +C+f+++tG Ck+G  CkF+H++
  AA40G00457 276 GQTECQFYMKTGDCKFGTVCKFHHPK 301
                 6789********************96 PP
5zf-CCCH38.22.5e-12321347127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++lC f++r+G+Ck+G++CkF H++
  AA40G00457 321 PGEPLCVFYSRYGICKFGPSCKFDHPM 347
                 589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.9E-54572IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4554573IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-74771IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-55073IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-45172IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-491118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.56391119IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-894118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-595120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-497118IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5137164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.286137165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6138165IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10140164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4143164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.723274302IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5274301IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-8276301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-5277302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4280301IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7320347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.234320348IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9322347IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5323348IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4325345IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MDFDSRIPIS REPNSLSPLL NRDAMWQINL GSDDTIDGFG SYPERPGEPD CSYYIRTGLC  60
RFGSTCRFNH PHDRKLVITS ARVTGEEYPE RIGQPECEYY IKTGTCKFGV TCKFDHPRNK  120
AGIAGKVSLN VLGYPLRPNE DDCSYFLRTG QCKFGGTCKF NHPQSSNMMF SLRGSPVYPP  180
VQSPTGQQWS RPSFPSSFPS LLLSQGVVPV QGWNTYSGQF GALSPSGSDH NYRNQQENEG  240
KESGSPSFLS TGFHSSSMPL GFYALPRENV FPERPGQTEC QFYMKTGDCK FGTVCKFHHP  300
KDRQIPTPDC ALSPVSLPLR PGEPLCVFYS RYGICKFGPS CKFDHPMRVF TYTNPSPLQP  360
PHTTMPLLVS SSSSSPPMAA GEAQAEEVAE QSSGTEKARR VSVSETPSGQ DNNSVDAEEQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA40G00457
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010525081.10.0PREDICTED: zinc finger CCCH domain-containing protein 33-like isoform X1
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLR0H7930.0R0H793_9BRAS; Uncharacterized protein
STRINGBostr.2902s0390.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-179zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]