PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA41G00042
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 228aa    MW: 25362.6 Da    PI: 7.2155
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA41G00042genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-1974124255
         AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdp   + k  r++lg+f+ta eAa+ +++a+ kl+g
  AA41G00042  74 HYRGVRRRP-WGKYAAEIRDP---NkKGSRVWLGTFDTAIEAARGYDKAAFKLRG 124
                 7********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.5E-3273133IPR001471AP2/ERF domain
PfamPF008474.3E-1374124IPR001471AP2/ERF domain
SMARTSM003805.6E-3774138IPR001471AP2/ERF domain
CDDcd000181.76E-3174132No hitNo description
PROSITE profilePS5103224.26374132IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2274133IPR016177DNA-binding domain
PRINTSPR003673.5E-107586IPR001471AP2/ERF domain
PRINTSPR003673.5E-1098114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MASLHQQQTA LDLITQHLLT DFSSLETFVS SIDHCTATVT TYHSPNTTLS QRKPPLKTIA  60
VPKPLVPEGD DQRHYRGVRR RPWGKYAAEI RDPNKKGSRV WLGTFDTAIE AARGYDKAAF  120
KLRGSKAILN FPLEAGKQED KDNNDDEKTV SGKRKREVME EDLSSHKTAK KEDGGAALKV  180
EAQSEICPLT PSSWMGFWDG VESIEMELFA VPPLSPHPSL GYSQLVVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2973139470ATERF1
3gcc_A4e-2973139470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA41G00042
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX0032484e-63JX003248.1 Capsella rubella clone BAC 34G24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882099.11e-109ethylene-responsive transcription factor ERF105-like
SwissprotQ8VY901e-100EF105_ARATH; Ethylene-responsive transcription factor ERF105
TrEMBLK4FQC51e-105K4FQC5_ARAHA; Uncharacterized protein
STRINGBostr.15774s0261.1.p1e-112(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78932641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.13e-99ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]
  3. Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
    ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
    Plant Cell Environ., 2017. 40(1): p. 108-120
    [PMID:27723941]
  4. König K,Vaseghi MJ,Dreyer A,Dietz KJ
    The significance of glutathione and ascorbate in modulating the retrograde high light response in Arabidopsis thaliana leaves.
    Physiol Plant, 2018. 162(3): p. 262-273
    [PMID:28984358]