PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA420G00009

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

G2-like

Protein Properties

Length: 182aa MW: 20228.8 Da PI: 4.5849

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA420G00009	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	86.2	3.3e-27	67	117	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+rlrWt+eLH+ F++av++LGG+++AtPk+++elm+v+g++l+hvkSHLQ AA420G00009 67 KTRLRWTKELHDIFLNAVAKLGGPKRATPKKVKELMEVEGIALHHVKSHLQ 117 68************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.231	64	124	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.5E-23	64	117	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.42E-13	66	119	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-23	67	117	IPR006447	Myb domain, plants
Pfam	PF00249	3.0E-6	69	117	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MKSQHLMSNK GKEKVVEEEA TIATQIENET CTKTMEEDQC TKESNEESKN CSSSKITACI 60 FITADDKTRL RWTKELHDIF LNAVAKLGGP KRATPKKVKE LMEVEGIALH HVKSHLQLNA 120 LQSSNMNQIL EAPLGEGNLP PSMVSDVANY VDEYIDWGQV ENINDEVDPV EVLESLGFGV 180 SP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	67	117	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	67	117	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	67	117	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	67	117	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	67	117	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	67	117	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	67	117	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	67	117	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA420G00009

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_178659.1	1e-31	Homeodomain-like superfamily protein
Refseq	XP_024009285.1	3e-31	uncharacterized protein LOC18014183
TrEMBL	V4LBC5	5e-31	V4LBC5_EUTSA; Uncharacterized protein
STRING	Bostr.24399s0035.1.p	5e-32	(Boechera stricta)
STRING	XP_006418607.1	8e-32	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13406	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G06020.1	2e-30	G2-like family protein