PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA43G00001
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 145aa    MW: 16510.7 Da    PI: 9.2553
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA43G00001genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.25e-191464155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++++GVr ++ +gr++AeIrdps+   +kr++lg+f ta +Aa+a+++a+++++g
  AA43G00001 14 CRFRGVRKRP-WGRYAAEIRDPSK---KKRVWLGTFETAHDAARAYDKAAREFRG 64
                689*******.**********965...6************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.8E-121464IPR001471AP2/ERF domain
CDDcd000184.66E-321472No hitNo description
PROSITE profilePS5103223.4851572IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-311572IPR001471AP2/ERF domain
SMARTSM003809.5E-381578IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-221573IPR016177DNA-binding domain
PRINTSPR003673.2E-101627IPR001471AP2/ERF domain
PRINTSPR003673.2E-103854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MVVNSYKNVE PKECRFRGVR KRPWGRYAAE IRDPSKKKRV WLGTFETAHD AARAYDKAAR  60
EFRGVKAKTN FPLTCNLELE SLDLSLRCLG SVSTDSVRSH ESDLASVDMN SPSQRRFISS  120
FDLNQPAAEP EITSLNNFGI VFDFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-221276267ATERF1
3gcc_A2e-221276267ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11938RKRPWGRYAAEIRDPSKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA43G00001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018499085.11e-33PREDICTED: ethylene-responsive transcription factor 4-like
RefseqXP_018503041.16e-34PREDICTED: ethylene-responsive transcription factor 4-like
STRINGXP_009339319.11e-33(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-25erf domain protein 9