PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA43G00098
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 209aa    MW: 23396.6 Da    PI: 10.556
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA43G00098genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-05183205223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +CpdC++ F ++++L+ H+ + H
  AA43G00098 183 SCPDCSEIFINSESLQLHQAVrH 205
                 8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280182205IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGKAKEQKRS SKIVMIEKKQ ESKSRSWPVA MRSLFSFKQH YIPKQEKSTS EETLIKKTKK  60
IRCSGSLCSN TKVMHKPEIS QSPQTLKKTK QNSIDNNNKN KNNNTVSSSS SSSSSNSSST  120
RSIKAKEANS SSSSSLSLTV DSKESSFRGM PFRRFHGCYE CRMVIDPVLG ITRDSSLRAN  180
ICSCPDCSEI FINSESLQLH QAVRHAVYI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA43G00098
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544461.11e-48PREDICTED: uncharacterized protein LOC104817077
TrEMBLA0A2I4H5D61e-43A0A2I4H5D6_JUGRE; uncharacterized protein LOC109013663
STRINGXP_010544461.15e-48(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.18e-15C2H2-like zinc finger protein