PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA44G00029
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 239aa    MW: 27763.1 Da    PI: 7.0911
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA44G00029genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-0794113626
                 -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                 C+ f+  G C++Gd C FaHg
  AA44G00029  94 CPAFRN-GACHRGDACEFAHG 113
                 666666.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.9E-488114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.32488115IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-693113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-594116IPR000571Zinc finger, CCCH-type
SMARTSM0035618123146IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MLKSVSLMRF YEIGEQQYPS VGYIVRKSGN VVDPPIPTVD DAIYGSDEFR MYAYKIKRCP  60
RTRSHDWTEC PYAHRGEKAT RRDPRRYSYC AVACPAFRNG ACHRGDACEF AHGVFEYWLH  120
PARYRTRACN AGELCQRKVC FFAHSPEQLR QSEAKQRSSR YTYRPVKTVR GGEGSVVRRM  180
EGEDYDTWQS AVKEDLESNE ESVSELLKCW SGMSIVDDRC YEPSDLELSH FDWISELVD
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA44G00029
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444955.11e-133PREDICTED: zinc finger CCCH domain-containing protein 54
SwissprotO650361e-133C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLQ6V5H61e-133Q6V5H6_ARAAE; Cu2+ plastocyanin-like
STRINGA0A087G5I51e-133(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115272126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.11e-127C3H family protein