PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA44G00033

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

ERF

Protein Properties

Length: 210aa MW: 23881.5 Da PI: 5.2268

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA44G00033	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.9	7.8e-16	114	164	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+f + +Aa+a++ a+ kl+g AA44G00033 114 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFESDVDAARAYDFAAFKLRG 164 7******.******954..34******99***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.7E-30	113	173	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.29E-22	114	173	IPR016177	DNA-binding domain
Pfam	PF00847	1.8E-10	114	164	IPR001471	AP2/ERF domain
CDD	cd00018	4.42E-29	114	172	No hit	No description
SMART	SM00380	2.4E-35	114	178	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.619	114	172	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.6E-13	115	126	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.6E-13	154	174	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
METFEESSDL ETIHRHLFED FMVSDTFMKD FDFDDSFVSG LWCVEPVNQV LKQEPDSPVL 60 DPDSFVREFL QVEAELSSPS ATAPEVTELK SSSTEIESAV STRKKAKRFE EPRHYRGVRR 120 RPWGKFAAEI RDPAKKGSRI WLGTFESDVD AARAYDFAAF KLRGRKAVLN FPLDAGKYDA 180 PVNSGRKRKR PDVQELQRTQ SNSSSSSSSD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-28	113	185	4	69	ATERF1
3gcc_A	1e-28	113	185	4	69	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA44G00033

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY350712	5e-81	AY350712.1 Arabidopsis arenosa clone BAC Aer6D24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009122325.2	1e-103	PREDICTED: ethylene-responsive transcription factor ERF106
Refseq	XP_013715722.1	1e-103	ethylene-responsive transcription factor ERF106
Swissprot	Q9LY05	1e-95	EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBL	Q6V5I2	1e-107	Q6V5I2_SISIR; AP2 transcription factor
STRING	Bra009250.1-P	1e-102	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3229	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07580.1	3e-96	ERF family protein

Publications ? help Back to Top
Kim H,Go YS,Suh MC DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves. Plant Cell Physiol., 2018. 59(5): p. 966-977 [PMID:29425344]