PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA44G00073

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

TCP

Protein Properties

Length: 301aa MW: 34679 Da PI: 7.4828

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA44G00073	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	97.5	2.5e-30	60	172	3	117
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.kaaksaa.kskk 99 g+kdrhsk++T +g+RdRR+Rls+ +a++++dLqd+LG+ ++sk i+WLlq+a+ ++ l+ +++++ + + +s +++n++ g ++++ ++ AA44G00073 60 GGKDRHSKVCTVRGLRDRRIRLSVMTAIQLYDLQDRLGLNQPSKVIDWLLQAAQNDVDLLPPLQFPPGFHQ-NYQSYPETNNNNLGlF-QSFDLgDCSS 156 78*************************************************************88888333.3333333333344442.3333324444 PP TCP 100 sqksaasalnlakesrak 117 s+k+++ l+l k ++ k AA44G00073 157 SRKESN--LDLEKGKSIK 172 444444..4444444333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.999	61	119	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.8E-28	61	174	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MIRSNSREHH EDEDNNKHHH HHHNIMNLNH EQQEHQQQQR RSWTTAFRNP RIVRVSRTFG 60 GKDRHSKVCT VRGLRDRRIR LSVMTAIQLY DLQDRLGLNQ PSKVIDWLLQ AAQNDVDLLP 120 PLQFPPGFHQ NYQSYPETNN NNLGLFQSFD LGDCSSSRKE SNLDLEKGKS IKFDNREHGF 180 DIDHHYFPNS TQSHKLYNNN NFSPATAYNS SSHQYDIGHL QQSLLDQSSN VTVAFSNVHH 240 HHHHTNINLN PPPAPPQQAS DESQAFPATM SSLFPTYPSF LGGGQLQLFG SNSNISKERD 300 M

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-18	66	120	1	55	Putative transcription factor PCF6
5zkt_B	1e-18	66	120	1	55	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00497	DAP	Transfer from AT5G08070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA44G00073

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019090313.1	7e-93	PREDICTED: transcription factor TCP17-like
Swissprot	Q9LEZ9	2e-86	TCP17_ARATH; Transcription factor TCP17
TrEMBL	A0A3P6A0R2	4e-87	A0A3P6A0R2_BRACM; Uncharacterized protein
STRING	Bostr.13129s0160.1.p	2e-96	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3576	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08070.1	2e-77	TCP domain protein 17

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]