PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA44G00139
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 539aa    MW: 59683.2 Da    PI: 9.4871
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA44G00139genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.59.8e-18277326255
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r +h++ E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  AA44G00139 277 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 326
                 889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.4E-23274344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.225275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-19276344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.91E-15277328No hitNo description
PfamPF000103.3E-15277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-13281331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MELPQPRPFE TKGRKSTHDF LSIRSHSTVQ SDPKPTPSSS QGGRLKTHDF LQPLESVGAK  60
EEISRIDTTT TESEKPPPPA PPPQQPRLLP SSSLDHQHVL PGGIGTYTIS PIPYFHHQSV  120
TKPEMFTASQ ASGDDENSNS LCSSYAASGF TLWDESSGGK KGQTRKENVG ERLSIRADAG  180
VTTMGQWPGL ERRSQSLTNN NLGSFSSRSS SQGSGLKSQS FMDMIRSAKG SSQDDDLDDD  240
EDFVMKKETS STSQRVDLRV KADGRGAGND QKVNTPRSKH SATEQRRRSK INDRFQMLRQ  300
LIPNSDQKRD KASFLLEVIE YIQFLQDKAN KYETPYQGWN QEPRKPLNWQ RNSQQSLPEG  360
TVTFTPKLEE KNNIPVIKTT QSVPIDHHHP GTLNRAMTTT PFSLPLQSNT LFSPVLPGTP  420
VTQFHTRMAS PETTVVQPNR SSRTQPQPYA VAFKEEEDVH EGNISVSSAY SKGLVKTLKE  480
ALENSGVDLA KATISVEIEL AKQSSLPSSS SSFKDHETRG PCNDDGKQTR KPKRLKTGQ
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA44G00139
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399300.10.0transcription factor BIM1 isoform X1
SwissprotQ9LEZ30.0BIM1_ARATH; Transcription factor BIM1
TrEMBLV4LLR00.0V4LLR0_EUTSA; Uncharacterized protein
STRINGXP_006399300.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69672744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.40.0bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]