PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA44G00145
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NF-YB
Protein Properties Length: 162aa    MW: 18152.4 Da    PI: 4.2836
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA44G00145genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB772.7e-2411103393
       NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvepl.kvyl.kkyrel 93 
                 ++d+ lP a +++i+k++lPa+ ++++da++++ ec +efi +v+se+++ c++e+++ti+++ +l al  lGf +yv ++ ++y  +ky  +
  AA44G00145  11 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVGEVyDAYEqHKYETM 103
                 6899**************************************************************************776356641455554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.3E-398140IPR009072Histone-fold
SuperFamilySSF471135.64E-3512142IPR009072Histone-fold
PfamPF008088.0E-221479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDPMDIVGKS KEDASLPKAT MTKIIKEMLP ADVRVARDAQ DLLIECCVEF INLVSSESNE  60
VCNKEDKRTI APEHVLKALQ VLGFGEYVGE VYDAYEQHKY ETMQDSQRSV KMNSGTEMTE  120
EEAAAEQQRM FAEARARMNG GIAVPQTDQL ETEQSQSNNL QS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B1e-351213512133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA44G00145
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455118.11e-101PREDICTED: protein Dr1 homolog isoform X1
RefseqXP_018457260.11e-101PREDICTED: protein Dr1 homolog isoform X1
SwissprotP495921e-101NC2B_ARATH; Protein Dr1 homolog
TrEMBLV4KWV85e-99V4KWV8_EUTSA; Uncharacterized protein
STRINGXP_010454589.11e-100(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38282660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.27e-84nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]