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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | AA44G00220 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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| Family | CAMTA | ||||||||
| Protein Properties | Length: 1025aa MW: 115098 Da PI: 6.1468 | ||||||||
| Description | CAMTA family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | CG-1 | 181.8 | 7.7e-57 | 5 | 122 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99
l+e ++rwl++ ei++iL+n+e++++++e+++ p sgsl+L++rk++ryfrkDG++w+kkkdgkt++E+hekLKvg+++vl+cyYah+e+n++fqrr+y
AA44G00220 5 LSEaQHRWLRPAEICEILQNYENFHISSESPSLPASGSLFLFDRKVLRYFRKDGHNWRKKKDGKTIKEAHEKLKVGSIDVLHCYYAHGEDNENFQRRSY 103
45559********************************************************************************************** PP
CG-1 100 wlLeeelekivlvhylevk 118
w+Le+el +iv+vhylevk
AA44G00220 104 WMLEQELMHIVFVHYLEVK 122
****************985 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51437 | 82.978 | 1 | 127 | IPR005559 | CG-1 DNA-binding domain |
| SMART | SM01076 | 1.0E-83 | 4 | 122 | IPR005559 | CG-1 DNA-binding domain |
| Pfam | PF03859 | 4.5E-50 | 7 | 121 | IPR005559 | CG-1 DNA-binding domain |
| SuperFamily | SSF81296 | 1.82E-14 | 414 | 500 | IPR014756 | Immunoglobulin E-set |
| PROSITE profile | PS50297 | 14.265 | 599 | 670 | IPR020683 | Ankyrin repeat-containing domain |
| SuperFamily | SSF48403 | 7.77E-16 | 600 | 724 | IPR020683 | Ankyrin repeat-containing domain |
| Gene3D | G3DSA:1.25.40.20 | 4.3E-15 | 600 | 725 | IPR020683 | Ankyrin repeat-containing domain |
| CDD | cd00204 | 3.17E-11 | 605 | 722 | No hit | No description |
| PROSITE profile | PS50088 | 8.977 | 616 | 648 | IPR002110 | Ankyrin repeat |
| SuperFamily | SSF52540 | 1.35E-8 | 839 | 891 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| SMART | SM00015 | 0.051 | 839 | 861 | IPR000048 | IQ motif, EF-hand binding site |
| PROSITE profile | PS50096 | 7.693 | 841 | 869 | IPR000048 | IQ motif, EF-hand binding site |
| Pfam | PF00612 | 7.7E-4 | 841 | 860 | IPR000048 | IQ motif, EF-hand binding site |
| SMART | SM00015 | 0.026 | 862 | 884 | IPR000048 | IQ motif, EF-hand binding site |
| PROSITE profile | PS50096 | 9.56 | 863 | 887 | IPR000048 | IQ motif, EF-hand binding site |
| Pfam | PF00612 | 1.2E-4 | 865 | 884 | IPR000048 | IQ motif, EF-hand binding site |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1025 aa Download sequence Send to blast |
MQQLLSEAQH RWLRPAEICE ILQNYENFHI SSESPSLPAS GSLFLFDRKV LRYFRKDGHN 60 WRKKKDGKTI KEAHEKLKVG SIDVLHCYYA HGEDNENFQR RSYWMLEQEL MHIVFVHYLE 120 VKGNRTTVSG MKENNSNSVN GTASVNIDST TSPTSTLSSL CEDGDSGDSH QSSSILRASS 180 EPQTGIHDGW TSAPGIHSVH ETRDIESDSQ RLVHVTAWDA VGNSATRYPD PTSNDLLTKL 240 QPCNTGAMSV REKTDKSGLL TPELLRNPLQ PQLNWQIPLQ DDLPLPKWSM DLVSHSGMGD 300 DTGLALFEQS AHDNFETFSN LLGSHQQLTG NSFQALPSSM EPEYIPLKKS LLRKEDSLNK 360 VDSFSRWASK ELGEMEDLQM HSSGGDMAWT TVECATAAAG PSLCPSLSED QRFTIVDFWP 420 KCAHTDSEVE VMVIGTFLLS HQEVTNYNWS CMFGEVEVPA EILVDGVLCC HAPPHTFGQV 480 PFYVTCSNRF ACSEVREFDF LPGSTKKPNA VDMYGTYTNE ASLHLRFEKM LAHRAPIDEH 540 HIFEEVGEKR RKISKIMLLK EEKETLLLGG TYERDSSTKQ EPTEQLFKEQ LEDELYTWLI 600 HKVTEEGKGP NILDADGQGI LHFAAALGYD WAIKPILAAG VSINFRDING WSALHWAAFS 660 GSHFHVELTL YPVNFREETV AVLVSLGADT GALADPSPKH PMGKTAADLA YVNGQRGISG 720 FLAESSLTSY LEKLTMNPNE NSSPNSSGTK AVQTVSERTA APMSYGDVPE TLSLKDSLTA 780 VRNATQAADR LHQVFRMQSF QRKKLTELNN DEIDTTDDEL ALSFAAAKSK NSKHNEGTTV 840 HSAAIHIQKK YRGWKKRKEF LFIRQRVVKI QAHVRGHQAR KHYRPIVWSV MLLEKIILRW 900 RRKGSGLRGF KSNAIPKTIE PLTSSVSPTP QEDDYDFLKQ GRKQTEERLQ KALTRVKSMA 960 QYPEARDQYR RLLTVVEGYR ENEVENEASS SSAMNNIEGA INFEDDDLIG IDSLLDQHSL 1020 MSISP |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:11925432). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance (PubMed:19270186). Involved in freezing tolerance in association with CAMTA2 and CAMTA3. Contributes together with CAMTA2 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved in drought stress responses by regulating several drought-responsive genes (PubMed:23547968). Involved in auxin signaling and responses to abiotic stresses (PubMed:20383645). Activates the expression of the V-PPase proton pump AVP1 in pollen (PubMed:14581622). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:11925432, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:23547968, ECO:0000269|PubMed:23581962, ECO:0000305|PubMed:11925432}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | AA44G00220 |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Induced by UVB, wounding, ethylene and methyl jasmonate (PubMed:12218065). Induced by salt stress and heat shock (PubMed:12218065, PubMed:20383645). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:25627216}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020878491.1 | 0.0 | calmodulin-binding transcription activator 1 isoform X4 | ||||
| Swissprot | Q9FY74 | 0.0 | CMTA1_ARATH; Calmodulin-binding transcription activator 1 | ||||
| TrEMBL | V4N5T0 | 0.0 | V4N5T0_EUTSA; Uncharacterized protein | ||||
| STRING | Bostr.13129s0055.1.p | 0.0 | (Boechera stricta) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM4082 | 24 | 52 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G09410.2 | 0.0 | ethylene induced calmodulin binding protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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