PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA44G00275
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family EIL
Protein Properties Length: 430aa    MW: 49351 Da    PI: 4.9357
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA44G00275genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3394.41.6e-120353361291
                 XXXXXXXXXXXXXXXXXXXXXXX...XXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        EIN3   1 eelkkrmwkdqmllkrlkerkkq.lledkeaa.tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWke 97 
                 ++lkkrmwkd++ll++lk++k++  + + +++  +++ + ++ e +rrkkm+r+QD++LkYM+k+mevc+aqGfvYgi+pekgkp +g+sdsLr+WWk 
  AA44G00275  35 DDLKKRMWKDRNLLQKLKQQKRHyDVVSSSPSsSSTALTARRAESSRRKKMARSQDSVLKYMIKIMEVCKAQGFVYGIVPEKGKPITGSSDSLRRWWKQ 133
                 79********************9322222222244444559********************************************************** PP

                 XXXXXXXXXXXXXXX.......XXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT CS
        EIN3  98 kvefdrngpaaisky.......qaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskd 189
                 +v+fd+++p+ais+y       +a++li+s++  ++ e+ss  h+l+elqDTtlgSLLsalmqhc ppqrrfpl+kg++pPWWP+G+e wwge+g++++
  AA44G00275 134 NVQFDQTAPNAISDYltiaaaaAAQQLIQSSSILNDQESSSFLHMLQELQDTTLGSLLSALMQHCVPPQRRFPLDKGIAPPWWPKGTEIWWGEQGAAHE 232
                 ********************988999999998888999************************************************************* PP

                 --.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX..XXXXXXXXXXXXXXXXXXXXX CS
        EIN3 190 qgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss..slrkqspkvtlsceqkedveg 286
                  g+ppykkphdl+k wkvsvL+avikhms +i ++r+l+ qsk+lqdkm+ake++++++v+nqee+++++++ + +  ++++++++ +  +++k+  + 
  AA44G00275 233 LGPPPYKKPHDLRKSWKVSVLAAVIKHMSHNIGRVRRLATQSKCLQDKMMAKETDTWSRVINQEEALFKRLKISDNdeETKENNQENQEGSGSKRKCDF 331
                 *********************************************************************999994422333333333333333444443 PP

                 XXXXX CS
        EIN3 287 kkesk 291
                  + s+
  AA44G00275 332 VEPSQ 336
                 33333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048739.3E-11735297No hitNo description
Gene3DG3DSA:1.10.3180.107.6E-67171304IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.02E-56176300IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MVEVEELEPL SPIEDDDDDD HDEETNQFRE QITYDDLKKR MWKDRNLLQK LKQQKRHYDV  60
VSSSPSSSST ALTARRAESS RRKKMARSQD SVLKYMIKIM EVCKAQGFVY GIVPEKGKPI  120
TGSSDSLRRW WKQNVQFDQT APNAISDYLT IAAAAAAQQL IQSSSILNDQ ESSSFLHMLQ  180
ELQDTTLGSL LSALMQHCVP PQRRFPLDKG IAPPWWPKGT EIWWGEQGAA HELGPPPYKK  240
PHDLRKSWKV SVLAAVIKHM SHNIGRVRRL ATQSKCLQDK MMAKETDTWS RVINQEEALF  300
KRLKISDNDE ETKENNQENQ EGSGSKRKCD FVEPSQSSSS EDISSMLMMD HEWLATTTPS  360
SSNNGSSSCS SSNENWLDYL WFERMQQDLN CSKRFENDND DIAMDLNQFP ESESDNMNQN  420
FSVWDMGFEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A7e-591773034130Protein ETHYLENE INSENSITIVE 3
4zds_B7e-591773034130Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA44G00275
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133952e-63AB013395.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23.
GenBankAB4938142e-63AB493814.1 Arabidopsis thaliana At5g65100 mRNA for hypothetical protein, partial cds, clone: RAAt5g65100.
GenBankCP0026882e-63CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131144.10.0PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX161e-175EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A3P5ZK850.0A0A3P5ZK85_BRACM; Uncharacterized protein
STRINGBo2g009710.10.0(Brassica oleracea)
STRINGfgenesh2_kg.6__972__AT5G10120.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.11e-145EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]