PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA44G00500

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

NF-YA

Protein Properties

Length: 291aa MW: 31872 Da PI: 6.683

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA44G00500	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	90.2	2.6e-28	180	242	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk......pylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RR++Rak+e e+k+ +k rk pylheSRhkhA+rR+R+sgGrF AA44G00500 180 QEPVYVNAKQYEGILRRRKARAKAELERKV-IKDRKvfsflvPYLHESRHKHAMRRARASGGRF 242 69*************************9.777765666669******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.6E-31	178	245	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	32.78	179	245	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.5E-26	181	242	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	184	204	IPR018362	CCAAT-binding factor, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010262	Biological Process	somatic embryogenesis
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0055046	Biological Process	microgametogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MQSKPGREND SEVNHHADQQ PMMYPEPWWR NNSFSVVPQA RPSGVPSNSS SMECPNGSES 60 NEVHSASEDG ALNGENDGNW KESQAATSSR SGFSLKFSVD NHGLEGSDPA HMPASMSNMQ 120 DQQLVQPPEL VGHYIACVSN PYQDAYFGGM MGAYGHQPLG FRPYPGMPRE RTALPLDMTQ 180 EPVYVNAKQY EGILRRRKAR AKAELERKVI KDRKVFSFLV PYLHESRHKH AMRRARASGG 240 RFAKKTEVEA AEDGGRERER GSGGSQSGTD SSGSEPVGAD SNETLNSSGA A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-15	179	242	1	58	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	226	235	RHKHAMRRAR

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA44G00500

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK317299	3e-98	AK317299.1 Arabidopsis thaliana AT5G12840 mRNA, complete cds, clone: RAFL21-66-A21.
GenBank	BT025801	3e-98	BT025801.1 Arabidopsis thaliana At5g12840 mRNA, complete cds.
GenBank	Y13720	3e-98	Y13720.1 Arabidopsis thaliana mRNA for Hap2a transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006399770.1	1e-165	nuclear transcription factor Y subunit A-1 isoform X1
Swissprot	Q9LXV5	1e-163	NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBL	V4LN10	1e-164	V4LN10_EUTSA; Uncharacterized protein
STRING	XP_006399770.1	1e-165	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5946	26	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.3	1e-140	nuclear factor Y, subunit A1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Siriwardana CL, et al. NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T. PLoS Genet., 2016. 12(12): p. e1006496 [PMID:27977687] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]