PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA44G00567
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 69aa    MW: 8231.48 Da    PI: 11.1302
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA44G00567genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.51e-152768247
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47
                +y+G+r +k +g+WvAeIr+p   +kr r++lg++ ta  Aa+a++
  AA44G00567 27 RYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTAVAAARAYD 68
                7******99.**********9...336******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.36E-172768No hitNo description
SuperFamilySSF541712.88E-152768IPR016177DNA-binding domain
SMARTSM003806.8E-142769IPR001471AP2/ERF domain
PfamPF008471.8E-92768IPR001471AP2/ERF domain
PROSITE profilePS5103219.0852769IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-222769IPR001471AP2/ERF domain
PRINTSPR003671.8E-92839IPR001471AP2/ERF domain
PRINTSPR003671.8E-95066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MEREGSISIS LCEEKRKRKP ESTKERRYRG IRMRKWGKWV AEIREPNKRS RIWLGSYTTA  60
VAAARAYDT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA44G00567
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438722.13e-27PREDICTED: ethylene-responsive transcription factor RAP2-9
SwissprotQ8W3M31e-26RAP29_ARATH; Ethylene-responsive transcription factor RAP2-9
TrEMBLD7M7M21e-24D7M7M2_ARALL; Uncharacterized protein
STRINGXP_010438722.11e-26(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06746.14e-29related to AP2 9
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]