PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA44G00589
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 234aa    MW: 24634.7 Da    PI: 10.208
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA44G00589genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.5e-123883555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                h+++Er RR+ri +++  L+el+P+       K +Ka++L + ++Y++ Lq
  AA44G00589 38 HSIAERLRRERIAERMKSLQELVPNT-----NKTDKASMLDEIIDYVRFLQ 83
                99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-173192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.57E-123187No hitNo description
PROSITE profilePS5088817.133382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-163592IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-93883IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-133988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080147Biological Processroot hair cell development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGSPEGLQPQ GTVSTTSAPV VRQKPRVRAR RGQATDPHSI AERLRRERIA ERMKSLQELV  60
PNTNKTDKAS MLDEIIDYVR FLQLQVKVLS MSRLGGAGNV GPRLSGLTSE VTGAGGRLNG  120
LNGLNGLNGL NGLNAPSNGV NGTGNVTGSG NESLRSTEQR VAKLMEEDMG SAMQYLQGKG  180
LCLMPISLAT AISSNTTHSR GALFTANSSA VQEETNVSVP ESSSTKDDVS VSKA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14247RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA44G00589
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_200609.11e-127LJRHL1-like 3
SwissprotQ9LSQ31e-128BH082_ARATH; Transcription factor bHLH82
TrEMBLA0A178UI771e-125A0A178UI77_ARATH; LRL3
STRINGAT5G58010.11e-126(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115851733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.12e-96LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tam TH,Catarino B,Dolan L
    Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68
    [PMID:26150509]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]