PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA44G00641
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 147aa    MW: 16370.9 Da    PI: 8.2316
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA44G00641genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.1e-054769123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C + F ++  L  H++ H
  AA44G00641 47 FSCNYCQRKFYSSQALGGHQNAH 69
                89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.54E-64474No hitNo description
PROSITE profilePS5015711.0944774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MDFQPNTSLR LSLPRSQLNL DLVLDPYSSS SSSSSTSSSS SEQPRVFSCN YCQRKFYSSQ  60
ALGGHQNAHK LERTLAKKSR ELFRSSSVVD HHSDQSYPFT GRFELYGRGY EGFVDRNNGG  120
AGGGRRVPDG GLDQDQEMSH LDLSLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA44G00641
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627204.19e-69PREDICTED: zinc finger protein 2
RefseqXP_022554540.19e-69zinc finger protein 2-like
RefseqXP_022554547.19e-69zinc finger protein 2-like
SwissprotQ392611e-66ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A087GBP92e-67A0A087GBP9_ARAAL; Uncharacterized protein
TrEMBLR0GS963e-67R0GS96_9BRAS; Uncharacterized protein
STRINGCagra.2848s0032.1.p5e-68(Capsella grandiflora)
STRINGA0A087GBP93e-68(Arabis alpina)
STRINGXP_006281125.15e-68(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66212844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.18e-53zinc finger protein 2