PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA44G00701

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

MYB_related

Protein Properties

Length: 178aa MW: 19623.9 Da PI: 7.1966

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA44G00701	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36	1.6e-11	34	78	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r ++++ q+ s+ qky AA44G00701 34 PWTEEEHRTFLIGLEKLGKGDWRGISRNYVITKSPTQVASHAQKY 78 8***************************889*********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.435	26	83	IPR017930	Myb domain
SuperFamily	SSF46689	3.14E-16	29	82	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.6E-18	30	82	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	2.1E-9	31	77	IPR009057	Homeodomain-like
SMART	SM00717	2.6E-8	31	81	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-10	34	78	IPR001005	SANT/Myb domain
CDD	cd00167	2.60E-8	34	79	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MDCLPASSSS SSSFAGYLSD GLPHKTPDRK KGVPWTEEEH RTFLIGLEKL GKGDWRGISR 60 NYVITKSPTQ VASHAQKYFL RQATGLHHKR RRTSLFDMIS TGSVEEINKI EKSQCDDDDH 120 PSSTTTEVVW KHGLINPRLG CIDPNETGSG NDGGLDLELK LATSLQSPES NIRSISVT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00565	DAP	Transfer from AT5G56840	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA44G00701

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010451524.1	1e-91	PREDICTED: uncharacterized protein LOC104733656
Swissprot	Q7XC57	2e-35	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A0D3EBW0	6e-85	A0A0D3EBW0_BRAOL; Uncharacterized protein
TrEMBL	R0EY53	2e-84	R0EY53_9BRAS; Uncharacterized protein
STRING	XP_010451524.1	4e-91	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5496	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56840.1	6e-85	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]