PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA44G00721
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 372aa    MW: 42158 Da    PI: 7.1787
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA44G00721genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.63.2e-33442061128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee...............................vikev.diykvePwdLpkkvkaeekewyfFskrdkk 67 
                 lp+G++F+Ptd+el+ ++L++kv+ k  + ee                               +i+   +i++++P++Lp  v+ +  + +fF+k +++
  AA44G00721  44 LPAGVKFDPTDQELI-QHLEAKVKVKVKRNEEeeeeeeeeedeeedeeekkkwshplidefipTIDGEdGICYTHPQKLP-GVTRDGLSRHFFHKPSRA 140
                 799************.99***998887333223467788999999**************97655666645**********.555666799********* PP

         NAM  68 yatgkrknr.atk...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                 y+tg+rk+r +++   + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++++ekt+Wvmh+y+l
  AA44G00721 141 YTTGTRKRRkIIQtgsETRWHKTGKTRPVMV-NGQQKGCKKILVLYtnFGKNKRPEKTNWVMHQYHL 206
                 *********5544233567************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-53665IPR003441NAC domain
PROSITE profilePS5100528.95944225IPR003441NAC domain
PfamPF023651.3E-1545206IPR003441NAC domain
SuperFamilySSF1019412.75E-3092225IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MKKSKANNII DSKLEEHHHL CGSKHCPGCG HIIKSSNKPN WVGLPAGVKF DPTDQELIQH  60
LEAKVKVKVK RNEEEEEEEE EEEDEEEDEE EKKKWSHPLI DEFIPTIDGE DGICYTHPQK  120
LPGVTRDGLS RHFFHKPSRA YTTGTRKRRK IIQTGSETRW HKTGKTRPVM VNGQQKGCKK  180
ILVLYTNFGK NKRPEKTNWV MHQYHLGVNE EEREGELLVS KIFYQTQPRL CLGANNNNNT  240
NNWSDFSGFK DVIGIGAGDE ISGVAAALKS LGSGDVVSRV TNPFTRGFNE ETVEASKGRE  300
VQHVYGTCHE VHDGRRPSSS SHHMIHDHHQ LRDRGEFHIP SSNLSLIPTI TSHSQHDQSS  360
SSVFNVISSV HF
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA44G00721
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001330095.10.0NAC domain containing protein 99
RefseqNP_001330096.10.0NAC domain containing protein 99
SwissprotQ9M0F81e-108NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A178ULY60.0A0A178ULY6_ARATH; NAC099
TrEMBLA0A178UNR50.0A0A178UNR5_ARATH; NAC099
STRINGAT5G56620.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149281720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56620.11e-171NAC domain containing protein 99
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]