PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA462G00001
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Dof
Protein Properties Length: 189aa    MW: 20429.5 Da    PI: 5.2572
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA462G00001genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.11.7e-372785462
       zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                 + l+cprC+stntkfCyynny+l+qPr+fCk+CrryWt+GG+lr++PvGgg+r+  ++s
  AA462G00001 27 EPLPCPRCNSTNTKFCYYNNYNLAQPRHFCKSCRRYWTQGGTLRDIPVGGGTRRGSSTS 85
                 6789*************************************************987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.0E-322882IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7422983IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103167IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-173674IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MPSESSETRA TRVHATTAIY PPPNLPEPLP CPRCNSTNTK FCYYNNYNLA QPRHFCKSCR  60
RYWTQGGTLR DIPVGGGTRR GSSTSSSTSS KRPRLVAVEA ENAGNATSET SQTKESSVVS  120
EYGSFVSLLD EQSNGGFLAL GNGNVTGGVH YGFEEMSIGY LGESTGEIPV IDGGDTWQIG  180
ETECMWPIL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00189DAPTransfer from AT1G47655Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA462G00001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013673122.12e-68dof zinc finger protein DOF1.6
SwissprotQ9SX971e-61DOF16_ARATH; Dof zinc finger protein DOF1.6
TrEMBLA0A0D3CNY45e-67A0A0D3CNY4_BRAOL; Uncharacterized protein
STRINGBo6g010470.19e-68(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47655.16e-45Dof family protein