PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA46G00052
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family BBR-BPC
Protein Properties Length: 297aa    MW: 33454 Da    PI: 9.5322
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA46G00052genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind323.85.2e-991929715301
   GAGA_bind  15 e................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpv 97 
                 +                ++++l   +++++ms++aerda+++ern+a+s+kk+a+a+rd+a+lqrdkal+er++al+erdn+++al+++ensl++al+ 
  AA46G00052  19 KgaqamwnmmpqhqmkeQHNALV--MNKKIMSILAERDAAVQERNQAVSAKKEALAARDEALLQRDKALSERDEALMERDNAFAALQHHENSLNFALSG 115
                 35555555554443332445565..99*****************************************************************9999988 PP

   GAGA_bind  98 gvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl 196
                 g +++s+   +d l                e++klea+p+++ + e+k  kk+kk++++++pk+      kk +e+ +++v++++  ++ ++++++ d+
  AA46G00052 116 GKRCSSNGDVVDGLSL-------------VETHKLEAFPLSSLPAEVK-LKKRKKESKQRQPKV------KKVGEDLNRRVTTPG--KKCRTDWDTHDI 192
                 8888888877775554.............6789999999988665554.444554555555554......55566788999***9..56********** PP

   GAGA_bind 197 vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtn 295
                 +ln v++De+t+PvPvC+CtG+ +qCYkWGnGGWqS+CCttt+S+yPLP+++++r++R++grKmS+++f++lL++La+eG dls+pvDLkd+WA+HGtn
  AA46G00052 193 GLNLVTFDETTMPVPVCTCTGSAHQCYKWGNGGWQSSCCTTTLSQYPLPQMPNKRHSRMGGRKMSGNVFTRLLSRLAGEGQDLSCPVDLKDYWARHGTN 291
                 *************************************************************************************************** PP

   GAGA_bind 296 kfvtir 301
                 +++ti+
  AA46G00052 292 RYITIK 297
                 *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012264.7E-1521297IPR010409GAGA-binding transcriptional activator
PfamPF062175.5E-9319297IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MENSGQYENG RYNPTDYLKG AQAMWNMMPQ HQMKEQHNAL VMNKKIMSIL AERDAAVQER  60
NQAVSAKKEA LAARDEALLQ RDKALSERDE ALMERDNAFA ALQHHENSLN FALSGGKRCS  120
SNGDVVDGLS LVETHKLEAF PLSSLPAEVK LKKRKKESKQ RQPKVKKVGE DLNRRVTTPG  180
KKCRTDWDTH DIGLNLVTFD ETTMPVPVCT CTGSAHQCYK WGNGGWQSSC CTTTLSQYPL  240
PQMPNKRHSR MGGRKMSGNV FTRLLSRLAG EGQDLSCPVD LKDYWARHGT NRYITIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151155KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA46G00052
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294544.10.0protein BASIC PENTACYSTEINE4
RefseqXP_023639537.10.0protein BASIC PENTACYSTEINE4
SwissprotQ8S8C60.0BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLR0FWU30.0R0FWU3_9BRAS; Uncharacterized protein
STRINGBostr.5022s0111.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-173basic pentacysteine 4