PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA46G00065
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family SRS
Protein Properties Length: 103aa    MW: 11612.8 Da    PI: 6.5678
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA46G00065genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70280.93.4e-25659103154
      DUF702 103 sslPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                  ++P+e+ss+a frcvrvssvd+  g++++aYqt+++igGhvfkGiL+d+G+e+
  AA46G00065   6 GQFPAELSSPADFRCVRVSSVDNnnGDDQYAYQTTINIGGHVFKGILHDHGPEN 59 
                 57********************877899************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.4E-22658IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016245.4E-28757IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MHTTPGQFPA ELSSPADFRC VRVSSVDNNN GDDQYAYQTT INIGGHVFKG ILHDHGPEND  60
VMIIDHNHHH HHHQESLSSS LMIINRPLTD LMFGTHFSPH QKP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA46G00065
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001324102.16e-32SHI-related sequence3
RefseqNP_179735.16e-32SHI-related sequence3
SwissprotQ9SJT85e-33SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBLA0A1J3FFN08e-33A0A1J3FFN0_NOCCA; Protein SHI RELATED SEQUENCE 3
TrEMBLA0A1J3I8M58e-33A0A1J3I8M5_NOCCA; Protein SHI RELATED SEQUENCE 3 (Fragment)
STRINGAT2G21400.12e-31(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91882638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21400.17e-33SHI-related sequence3