PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA46G00073
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 422aa    MW: 48793.8 Da    PI: 5.5666
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA46G00073genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.4e-07263304144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      r rW++++ el++++++++G++  + + + ++ +R++ + k+++
       AA46G00073 263 RSRWSKQDNELFYEGIREFGSN-LEMVQQLFP-NRSRQHMKLKF 304
                      78******************99.*********.******99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159632.5E-22257340No hitNo description
SMARTSM007170.0069262310IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-8264314IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
KAGVKFKPKP KSRLRKQASV STSQALSKED LYDVTDQSIH GIVSEKKEEN HLDKETQEFL  60
NNFSTGTSDP DFIVNEKPKD EALNSKNITS DDLVQEELNP KETVPEMDTG QAPHGWEHEE  120
QAKSPVAGKE GYVGDTVREK NVRKSKRVAE KKKNINKESN QSSKKPQKKK TKHILWYSHV  180
LVEKELLKTP EDEIQFLPIK DMLKLVDYRE YLERKETIGE SPQNQERTSK HHSQDDCREN  240
EETSKVEPDL PVNYHTFGQR TGRSRWSKQD NELFYEGIRE FGSNLEMVQQ LFPNRSRQHM  300
KLKFKLEERK HPLKLTYALT SRAKHHTHFQ NVIKKLQEEA ATREEGEEEE AEIAEEERTD  360
VPQNGKPRKS DVTEKAEVKE SDGREAGHDF GSDGGEAEND LRSDGRDEDE VECDYWGNYT  420
SD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA46G00073
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866831.12e-82transcription factor TFIIIB component B'' homolog
RefseqXP_020874413.12e-82transcription factor TFIIIB component B'' homolog
TrEMBLB2BXT14e-86B2BXT1_9BRAS; Myb-transcription factor
STRINGBostr.27991s0196.1.p5e-85(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51542535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.14e-76MYB_related family protein